PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG235200.5.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 249aa    MW: 27016.5 Da    PI: 7.8844
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG235200.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.91.6e-1790136455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L+el+P++      K +Ka+iL +++eY+ksLq
  Pavir.6NG235200.5.p  90 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASILDETIEYLKSLQ 136
                          6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.46E-1782140No hitNo description
SuperFamilySSF474591.57E-2084145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.48286135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-1590136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-2190140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-1792141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MPAGVNRGED ASLQSEVPHG AGAGTSSSGG SGSNYGGSGL PSDSGHVQKG KGMCRDDSDS  60
RSEDAECEET EETKSLRRCG TKRRTRAAEV HNLSERRRRD RINEKMRALQ ELIPHCNKTD  120
KASILDETIE YLKSLQMQVQ IIGMTSGMAP MMFPGAHQFM SPMALGMNSA CITAAQGLSQ  180
MPRLPYMNLP LPNHIPLNSS PAMNPINSPS IANEMQNVHL MEASNHFLHP RWRANIGTSG  240
TRNPCLWT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18198KRRTRAAEVHNLSERRRR
29499ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.420240.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981539.11e-126PREDICTED: transcription factor PIF4-like isoform X1
RefseqXP_004981540.11e-126PREDICTED: transcription factor PIF4-like isoform X1
RefseqXP_012704121.11e-126PREDICTED: transcription factor PIF4-like isoform X1
RefseqXP_012704122.11e-126PREDICTED: transcription factor PIF4-like isoform X2
TrEMBLK4AAB21e-126K4AAB2_SETIT; Uncharacterized protein
STRINGSi035818m1e-125(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.42e-33phytochrome interacting factor 3-like 6